PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01063g03005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 496aa    MW: 55282.9 Da    PI: 5.2313
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01063g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.8e-36171092103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sws++ nsfvv++  efa++vLpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Niben101Scf01063g03005.1  17 FLSKTYDMVDDSSTDSVVSWSKSHNSFVVWNVPEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 92 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+k++l++i r+k +
  Niben101Scf01063g03005.1  93 LRGHKHQLKSISRRKPS 109
                               **************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3810101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.28E-3412106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5913106IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDGVHENTVV GNSPPPFLSK TYDMVDDSST DSVVSWSKSH NSFVVWNVPE FARDVLPKYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHQL KSISRRKPSQ VQGHQQTTSQ  120
VQNASVGSCV EVGKFGTEDE VERLKRDKDV LMQELVELKQ QQQATDHQMQ TVGQRVQLME  180
KRQQQMMSFL AKAMQSPGFV AQLVHQQNGN NRRIAGMNKK RRLPDQDEEN VAGNPVNMSR  240
DGRIVRYQPS MNEAAKALLR QILKINTPGR LDNRLKNTNG LLTDNPLSPK NALSGDTSSR  300
ISGVTLSEVL SMSSQSHIMS DSGFPFSSCS SVMSESPSST TVVPGEAKVP TLCETDALNS  360
LTDHDLPEFS QEQRINRQET FGITGLKRSE TGNVPYIDTQ AFLDGVTAIV PDGFSADTHV  420
DVLLDDVPKL PAINDIFWDQ ILSASPLTGD MDEIGIEDGL EKEEDFLGVQ ENDLDKLNHM  480
CHLTEQMGLL SSAAQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241510627129Heat shock factor protein 1
5d5v_B1e-241510627129Heat shock factor protein 1
5d5v_D1e-241510627129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465973.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-150HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLM0ZU870.0M0ZU87_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000081990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-118heat shock factor 3